I have been fighting this issue for a long time now.
My new VKG Gladiator joystick replaced my old Logitech Extreme 3D Pro.
When first installed, I had trouble programming the Gladiator into SE because SE kept seeing the twist action as an Axis 5 instead of something like Axis 2, and then it would only see the positive side of Axis 5 (+ Axis 5) and never the negative side (- Axis 5) for the opposing twist direction.
After endless farting around with it I finally got it to see the negative side of the twist so I have all axis of control working now, but the stick will only drive the camera views. I cannot get my spaceships to respond to the new joystick. I have cycled endlessly thru the Controls menu trying to see if there is some checkbox I haven't checked to make this work, but I just can't see one and I'm all out of ideas.
Any help would be great, as this is an awesome joystick to use in all my other games.
Thanks,