You always may export video as a series of screenshots in SE, and combine them into whatever video container you wish with a third-party program. The fastest lossless format is uncompressed tga, the fastest compressed in jpeg.
Thank you very much for your help!
This is how I wound up doing it:
1) Set the windowed screen resolution in SE to 3216 x 1608 for a resulting 4k 360 video.
2) Export AVI compressed with DivX.
3) Splice together the resulting clips in VirtualDub for direct stream AVI copying.
4) Take the resulting AVI and convert it to MP4 with ffmpeg.
5) Inject the 360 data into the resulting MP4 with the Spatial Media Metadata Injector tool.
6) Upload the tagged 360 MP4 to YouTube
7) Download the full-resolution 360 encoded VR video when it's done processing.
If anybody needs any help making one of these videos, just ask, and I will do my best. Using ffmpeg is VERY easy, but you will likely need help getting started with it. Just ask! I will most likely make a thread about how to do this soon.
Here is my first result. It's not fantastic, but it's a MILLION times better than what I thought I would be able to produce. I've learned a lot, and feel confident that I will be able to improve the quality of my resulting videos. I am extremely happy right now, and this first video looks GREAT on an oculus rift, at 4k resolution!
[youtube]keOOuza3O0s[/youtube]