I would say that I'm spiritual in the sense of having a strong appreciation for life and deeper mysteries than just physics
I too believe in something deeper and more fundamental than what is described in traditional religions, even if I don't know what it actually is
Could you elaborate on what sorts of things you believe in beyond physics, and why you believe they exist?
I believe in life after death. I have not a clue what is after death. A simple 'nothing' that happens or just everything 'ends' does not satisfy me.
Just because an answer is unsatisfactory does not make it wrong. There are several things in this universe that I find unsatisfactory but are demonstrated to be physical truths. Satisfaction is not required for something to be reality.
The mind effects the world around us. I think of things, a thought, action. Later down the road it happens. Usually small things.
Do you mean other than through the actions of the person possessing the mind? If so, why do you think this? Thinking of something and then it happening, while very noticeable and memorable when it happens, generally doesn't happen at a rate inconsistent with random coincidence. We only think it does because we're biased towards noticing it when it happens. Think of all the thoughts you've ever had that have never manifested in reality. It's difficult because we tend to merely forget them, but they far outweigh the thoughts that do correlate to something happening in the world.
A few days ago I woke up around 8, then went back to bed. I felt my body going numb, I felt a gyrating sensation. My thoughts became dreams. The thoughts I thought became dreams. I acknowledged that I was thinking but not dreaming. Afterwards I remembered my thoughts as dreams.
Sounds like a classic case of sleep paralysis. It's happened to me before. It's a very strange phenomenon to experience if you don't know what it is, which is why it is often given supernatural significance by those who experience it.
Why? Why did I come to be on this planet? Why not some other planet in some other galaxy? I dunno. Perhaps nobody knows. Perhaps the universe has a reason for all of us to be here on this planet, a reason thats not we were all formed by atoms and such.
The question "why" is a malformed question. It presupposes the existence of some reason, some purpose. This very well may not exist. The only "why" that makes sense to ask is "what are the causal factors that led to" something.
I cannot fathom consciousness coming from atom
Yet it could still be the case. Whether something can be easily imagined or understood has no relationship with whether or not it can be true.
Where did consciousness come from? Why? How? Where? When?
This has been studied extensively, and there is good reason to believe that consciousness is an emergent property of the physical activities of the brain. Consciousness is probably not a binary thing, either existing or not existing. It probably can exist in gradients and evolutionary steps, like the sense of sight for example.
Can thoughts be read and recovered?
Almost certainly yes, using technology. Things like this are already being done experimentally using technology, though in a relatively primitive way.